Gene_name Class CGID Hypp0 Hypp1 Hypp2 Hypp3 Hypp4 Tissue Population xQTL SPG7 Basal cell carcinoma CGS01 0.0112 0.000422 0.229 0.00784 0.752 Brain_Putamen_basal_ganglia EUR eQTL ARL14EP Breast CGS02 0.0262 0.0273 0.0199 0.0199 0.907 Brain_Putamen_basal_ganglia EUR eQTL BRSK1 Breast CGS02 1.1e-79 2.59e-80 0.0248 0.00487 0.97 Brain_Putamen_basal_ganglia EUR eQTL C16orf72 Breast CGS02 0.0043 0.000384 0.221 0.019 0.755 Brain_Putamen_basal_ganglia EUR eQTL DDX17 Breast CGS02 8.54e-10 3.81e-09 0.0211 0.0934 0.886 Brain_Putamen_basal_ganglia EUR eQTL DIDO1 Breast CGS02 4.29e-06 6.18e-06 0.0496 0.0705 0.88 Brain_Putamen_basal_ganglia EUR eQTL FAM227A Breast CGS02 1.53e-11 1.21e-09 0.000377 0.029 0.971 Brain_Putamen_basal_ganglia EUR eQTL GSPT1 Breast CGS02 1.61e-10 5.94e-11 0.0514 0.018 0.931 Brain_Putamen_basal_ganglia EUR eQTL GTF2A1L Breast CGS02 1.24e-05 0.0264 2.14e-05 0.0447 0.929 Brain_Putamen_basal_ganglia EUR eQTL HSD17B6 Breast CGS02 5.67e-14 2.35e-15 0.138 0.00485 0.858 Brain_Putamen_basal_ganglia EUR eQTL KIAA1614 Breast CGS02 1.44e-07 3.78e-06 0.00216 0.0561 0.942 Brain_Putamen_basal_ganglia EUR eQTL KRTCAP3 Breast CGS02 6.63e-11 2.05e-11 0.116 0.0351 0.849 Brain_Putamen_basal_ganglia EUR eQTL LINC00654 Breast CGS02 0.0226 0.198 0.000635 0.0048 0.774 Brain_Putamen_basal_ganglia EUR eQTL MTOR Breast CGS02 0.00437 0.0391 0.00496 0.0435 0.908 Brain_Putamen_basal_ganglia EUR eQTL NBR2 Breast CGS02 1.18e-31 4.07e-07 1.45e-26 0.049 0.951 Brain_Putamen_basal_ganglia EUR eQTL PGAP3 Breast CGS02 3.6e-06 1.54e-05 0.00536 0.022 0.973 Brain_Putamen_basal_ganglia EUR eQTL PNP Breast CGS02 1.31e-06 9.81e-07 0.00483 0.00264 0.993 Brain_Putamen_basal_ganglia EUR eQTL POLG Breast CGS02 0.0438 0.0049 0.0708 0.00704 0.873 Brain_Putamen_basal_ganglia EUR eQTL SNX17 Breast CGS02 1.31e-11 1.88e-11 0.023 0.032 0.945 Brain_Putamen_basal_ganglia EUR eQTL STX6 Breast CGS02 2.95e-11 8.88e-07 4.44e-07 0.0124 0.988 Brain_Putamen_basal_ganglia EUR eQTL TMEM106A Breast CGS02 8.73e-07 6.89e-07 0.107 0.0838 0.809 Brain_Putamen_basal_ganglia EUR eQTL TRMT61B Breast CGS02 0.00442 0.205 0.000365 0.0162 0.774 Brain_Putamen_basal_ganglia EUR eQTL FANCI Breast CGS02 1.88e-14 4.56e-15 0.175 0.0417 0.783 Brain_Putamen_basal_ganglia EUR sQTL NBR2 Breast CGS02 1.5e-10 5.67e-07 1.84e-05 0.0687 0.931 Brain_Putamen_basal_ganglia EUR sQTL AMFR Breast CGS03 5.35e-08 5e-04 1.05e-05 0.0977 0.902 Brain_Putamen_basal_ganglia EUR 3'aQTL ANKLE1 Breast CGS03 0.00298 0.000422 0.171 0.0233 0.803 Brain_Putamen_basal_ganglia EUR eQTL ARHGEF5 Breast CGS03 6.02e-13 3.64e-08 6.15e-08 0.00272 0.997 Brain_Putamen_basal_ganglia EUR eQTL ATG10 Breast CGS03 7.35e-10 2.33e-08 0.00301 0.0948 0.902 Brain_Putamen_basal_ganglia EUR eQTL BBS2 Breast CGS03 6.67e-05 0.000559 0.0127 0.106 0.881 Brain_Putamen_basal_ganglia EUR eQTL CDC7 Breast CGS03 0.0853 0.017 0.0307 0.00524 0.862 Brain_Putamen_basal_ganglia EUR eQTL EFR3B Breast CGS03 0.0286 0.00421 0.156 0.0222 0.788 Brain_Putamen_basal_ganglia EUR eQTL EXOC3 Breast CGS03 3.72e-07 0.0169 1.34e-06 0.0601 0.923 Brain_Putamen_basal_ganglia EUR eQTL FBXO32 Breast CGS03 0.000346 0.055 1.82e-05 0.00195 0.943 Brain_Putamen_basal_ganglia EUR eQTL GATAD2A Breast CGS03 5.23e-08 7.01e-08 0.0696 0.0925 0.838 Brain_Putamen_basal_ganglia EUR eQTL KCNN4 Breast CGS03 1.57e-06 0.000105 0.000511 0.0332 0.966 Brain_Putamen_basal_ganglia EUR eQTL LINC00642 Breast CGS03 3.26e-07 2.45e-08 0.205 0.0147 0.78 Brain_Putamen_basal_ganglia EUR eQTL PRDX1 Breast CGS03 0.0026 0.00713 0.0381 0.104 0.848 Brain_Putamen_basal_ganglia EUR eQTL THBS3 Breast CGS03 0.000544 0.000337 0.0456 0.0274 0.926 Brain_Putamen_basal_ganglia EUR eQTL KCNN4 Breast CGS03 7.81e-15 1.21e-15 0.155 0.0232 0.822 Brain_Putamen_basal_ganglia EUR sQTL SNX11 Female genital organs CGS10 0.00113 0.0169 0.00831 0.124 0.849 Brain_Putamen_basal_ganglia EUR eQTL EFNA1 Gastric CGS13 1.37e-15 1e-16 0.178 0.0122 0.81 Brain_Putamen_basal_ganglia EAS eQTL LY6K Gastric CGS13 1.35e-40 3.05e-37 6.49e-05 0.145 0.855 Brain_Putamen_basal_ganglia EAS eQTL PSCA Gastric CGS13 1.33e-38 6.74e-38 0.00635 0.0313 0.962 Brain_Putamen_basal_ganglia EAS eQTL THBS3 Gastric CGS13 5.72e-31 6.34e-32 0.0675 0.00656 0.926 Brain_Putamen_basal_ganglia EAS eQTL PSMC4 Lung CGS15 0.0159 0.000748 0.146 0.00606 0.831 Brain_Putamen_basal_ganglia EAS sQTL RAD52 Lung CGS19 4.19e-05 0.000195 0.0104 0.0472 0.942 Brain_Putamen_basal_ganglia EUR eQTL CHRNA4 Lung CGS24 5.18e-05 0.000177 0.00465 0.0149 0.98 Brain_Putamen_basal_ganglia EUR eQTL HFM1 Lymphoma CGS25 0.00288 0.156 0.00128 0.0685 0.771 Brain_Putamen_basal_ganglia EUR eQTL LKAAEAR1 Male genital organs CGS29 9.08e-05 0.0286 0.000276 0.0862 0.885 Brain_Putamen_basal_ganglia EUR eQTL DEF8 Melanoma CGS30 8.87e-18 7.61e-17 0.0202 0.172 0.808 Brain_Putamen_basal_ganglia EUR eQTL SPIRE2 Melanoma CGS30 8.66e-11 4.58e-11 0.104 0.054 0.842 Brain_Putamen_basal_ganglia EUR eQTL ST7L Pancreatic CGS34 0.0138 0.128 0.00896 0.0828 0.766 Brain_Putamen_basal_ganglia EAS eQTL SMIM13 Prostate CGS35 7.94e-05 5.03e-06 0.175 0.0103 0.814 Brain_Putamen_basal_ganglia EUR 3'aQTL ANO1 Prostate CGS35 4.19e-13 6.18e-15 0.117 0.000837 0.882 Brain_Putamen_basal_ganglia EUR eQTL BHLHA15 Prostate CGS35 2.48e-34 2.16e-32 0.000569 0.0485 0.951 Brain_Putamen_basal_ganglia EUR eQTL GGCX Prostate CGS35 5.49e-22 3.13e-20 0.000423 0.0232 0.976 Brain_Putamen_basal_ganglia EUR eQTL GNLY Prostate CGS35 0.00607 0.13 0.00228 0.0482 0.813 Brain_Putamen_basal_ganglia EUR eQTL MRPS12 Prostate CGS35 0.000123 7.21e-06 0.143 0.00754 0.849 Brain_Putamen_basal_ganglia EUR eQTL PCAT19 Prostate CGS35 8.77e-22 2.75e-20 0.000216 0.00579 0.994 Brain_Putamen_basal_ganglia EUR eQTL RAD9A Prostate CGS35 0.000258 0.000149 0.0789 0.0448 0.876 Brain_Putamen_basal_ganglia EUR eQTL TCP1 Prostate CGS35 0.0832 0.0664 0.0284 0.0219 0.8 Brain_Putamen_basal_ganglia EUR eQTL TMEM17 Prostate CGS35 8.83e-06 4.62e-05 0.000382 0.000999 0.999 Brain_Putamen_basal_ganglia EUR eQTL LDAH Prostate CGS36 1.64e-08 0.000296 1.46e-06 0.0254 0.974 Brain_Putamen_basal_ganglia EAS 3'aQTL LDAH Prostate CGS36 1.14e-16 0.000293 1.02e-14 0.0252 0.975 Brain_Putamen_basal_ganglia EAS eQTL NKX3-1 Prostate CGS36 1.08e-30 8.87e-31 0.0504 0.0404 0.909 Brain_Putamen_basal_ganglia EAS eQTL PODXL2 Prostate CGS36 0.109 0.041 0.0312 0.0109 0.808 Brain_Putamen_basal_ganglia EAS eQTL TMEM17 Prostate CGS36 1.11e-10 3.5e-10 0.000633 0.000998 0.998 Brain_Putamen_basal_ganglia EAS eQTL LKAAEAR1 Prostate CGS37 9.86e-06 0.00311 0.000204 0.0634 0.933 Brain_Putamen_basal_ganglia EUR eQTL DEF8 Skin CGS38 0.000589 0.00505 0.00492 0.0413 0.948 Brain_Putamen_basal_ganglia EUR eQTL ARNT Skin CGS39 7.52e-07 0.00117 2.99e-05 0.0456 0.953 Brain_Putamen_basal_ganglia EUR eQTL HERC2P9 Skin CGS39 1.12e-11 1.26e-12 0.18 0.0194 0.8 Brain_Putamen_basal_ganglia EUR eQTL SPATA33 Skin CGS39 5.81e-07 1.35e-07 0.0274 0.00542 0.967 Brain_Putamen_basal_ganglia EUR eQTL NANS Thyroid CGS45 0.0026 0.000903 0.0214 0.00646 0.969 Brain_Putamen_basal_ganglia EUR eQTL CCDC180 Thyroid CGS45 0.0931 0.000804 0.094 0 0.812 Brain_Putamen_basal_ganglia EUR sQTL ANO9 Female genital organs CGS46 2.62e-10 1e-09 0.000706 0.0017 0.998 Brain_Putamen_basal_ganglia EUR eQTL C22orf31 Female genital organs CGS46 0.106 0.0308 0.0734 0.0206 0.77 Brain_Putamen_basal_ganglia EUR eQTL