Download ipaQTLs by single tissue:

Download page provides all the ipaQTLs across 49 human normal tissues and a table of all human trait- and disease- associated ipaQTLs for further analysis.
Guide

Tissue type Study Sample Size File Name
Adipose_Subcutaneous Adipose Subcutaneous GTEx 581  Adipose_Subcutaneous_ipaQTL.significant.txt.gz 
Adipose_Visceral_Omentum Adipose Visceral (Omentum) GTEx 469  Adipose_Visceral_Omentum_ipaQTL.significant.txt.gz 
Adrenal_Gland Adrenal Gland GTEx 233  Adrenal_Gland_ipaQTL.significant.txt.gz 
Artery_Aorta Artery Aorta GTEx 387  Artery_Aorta_ipaQTL.significant.txt.gz 
Artery_Coronary Artery Coronary GTEx 213  Artery_Coronary_ipaQTL.significant.txt.gz 
Artery_Tibial Artery Tibial GTEx 584  Artery_Tibial_ipaQTL.significant.txt.gz 
Brain_Amygdala Brain Amygdala GTEx 129  Brain_Amygdala_ipaQTL.significant.txt.gz 
Brain_Anterior_cingulate_cortex_BA24 Brain Anterior cingulate cortex (BA24) GTEx 147  Brain_Anterior_cingulate_cortex_BA24_ipaQTL.significant.txt.gz 
Brain_Caudate_basal_ganglia Brain Caudate (basal ganglia) GTEx 194  Brain_Caudate_basal_ganglia_ipaQTL.significant.txt.gz 
Brain_Cerebellum Brain Cerebellum GTEx 209  Brain_Cerebellum_ipaQTL.significant.txt.gz 
Brain_Cerebellar_Hemisphere Brain Cerebellar Hemisphere GTEx 175  Brain_Cerebellar_Hemisphere_ipaQTL.significant.txt.gz 
Brain_Cortex Brain Cortex GTEx 205  Brain_Cortex_ipaQTL.significant.txt.gz 
Brain_Frontal_Cortex_BA9 Brain Frontal Cortex (BA9) GTEx 175  Brain_Frontal_Cortex_BA9_ipaQTL.significant.txt.gz 
Brain_Hippocampus Brain Hippocampus GTEx 165  Brain_Hippocampus_ipaQTL.significant.txt.gz 
Brain_Hypothalamus Brain Hypothalamus GTEx 170  Brain_Hypothalamus_ipaQTL.significant.txt.gz 
Brain_Nucleus_accumbens_basal_ganglia Brain Nucleus accumbens (basal ganglia) GTEx 202  Brain_Nucleus_accumbens_basal_ganglia_ipaQTL.significant.txt.gz 
Brain_Putamen_accumbens_basal_ganglia Brain Putamen (basal ganglia) GTEx 170  Brain_Putamen_basal_ganglia_ipaQTL.significant.txt.gz 
Brain_Spinal_cord_cervical_c-1 Brain Spinal cord (cervical c-1) GTEx 126  Brain_Spinal_cord_cervical_c-1_ipaQTL.significant.txt.gz 
Brain_Substantia_nigra Brain Substantia nigra GTEx 114  Brain_Substantia_nigra_ipaQTL.significant.txt.gz 
Breast_Mammary_Tissu Breast Mammary Tissue GTEx 394  Breast_Mammary_Tissue_ipaQTL.significant.txt.gz 
Cells_Cultured_fibroblasts Cells Cultured fibroblasts GTEx 483  Cells_Cultured_fibroblasts_ipaQTL.significant.txt.gz 
Cells_EBV_transformed_lymphocytes Cells EBV-transformed lymphocytes GTEx 147  Cells_EBV-transformed_lymphocytes_ipaQTL.significant.txt.gz 
Colon_Sigmoid Colon Sigmoid GTEx 318  Colon_Sigmoid_ipaQTL.significant.txt.gz 
Colon_Transverse Colon Transverse GTEx 368  Colon_Transverse_ipaQTL.significant.txt.gz 
Esophagus_Gastroesophageal_Junction Esophagus Gastroesophageal Junction GTEx 330  Esophagus_Gastroesophageal_Junction_ipaQTL.significant.txt.gz 
Esophagus_Mucosa Esophagus Mucosa GTEx 493  Esophagus_Mucosa_ipaQTL.significant.txt.gz 
Esophagus_Muscularis Esophagus Muscularis GTEx 461  Esophagus_Muscularis_ipaQTL.significant.txt.gz 
Heart_Atrial_Appendage Heart Atrial Appendage GTEx 372  Heart_Atrial_Appendage_ipaQTL.significant.txt.gz 
Heart_Left_Ventricle Heart Left Ventricle GTEx 382  Heart_Left_Ventricle_ipaQTL.significant.txt.gz 
Kidney Kidney GTEx 73  Kidney_ipaQTL.significant.txt.gz 
Liver Liver GTEx 208  Liver_ipaQTL.significant.txt.gz 
Lung Lung GTEx 510  Lung_ipaQTL.significant.txt.gz 
Minor_Salivary_Gland Minor Salivary Gland GTEx 144  Minor_Salivary_Gland_ipaQTL.significant.txt.gz 
Muscle_Skeletal Muscle Skeletal GTEx 702  Muscle_Skeletal_ipaQTL.significant.txt.gz 
Nerve_Tibial Nerve Tibial GTEx 532  Nerve_Tibial_ipaQTL.significant.txt.gz 
Ovary Ovary GTEx 167  Ovary_ipaQTL.significant.txt.gz 
Pancreas Pancreas GTEx 305  Pancreas_ipaQTL.significant.txt.gz 
Pituitary GTEx 237  Pituitary_ipaQTL.significant.txt.gz 
Prostate GTEx 218  Prostate_ipaQTL.significant.txt.gz 
Skin_Not_Sun_Exposed_Suprapubic Skin Not Sun Exposed (Suprapubic) GTEx 517  Skin_Not_Sun_Exposed_Suprapubic_ipaQTL.significant.txt.gz 
Skin_Sun_Exposed_Lower_leg Skin Sun Exposed (Lower leg) GTEx 602  Skin_Sun_Exposed_Lower_leg_ipaQTL.significant.txt.gz 
Small_Intestine_Terminal_Ileum Small Intestine Terminal Ileum GTEx 174  Small_Intestine_Terminal_Ileum_ipaQTL.significant.txt.gz 
Spleen GTEx 227  Spleen_ipaQTL.significant.txt.gz 
Stomach GTEx 324  Stomach_ipaQTL.significant.txt.gz 
Testis GTEx 320  Testis_ipaQTL.significant.txt.gz 
Thyroid GTEx 574  Thyroid_ipaQTL.significant.txt.gz 
Uterus GTEx 129  Uterus_ipaQTL.significant.txt.gz 
Vagina GTEx 141  Vagina_ipaQTL.significant.txt.gz 
Whole_Blood Whole Blood GTEx 670  Whole_Blood_ipaQTL.significant.txt.gz 

Download human trait- and disease- associated ipaQTLs:

Number of tissues Number of traits/diseases Number of ipaQTLs Trait- and disease- associated ipaQTLs
49 2,177 10,386  Traits_diseases_associated_ipaQTLs.txt.gz